Data

This page lists all data sources loaded along with the date the data was downloaded and related publication. NOTE: All external links open in a new window.

Data Category Organism Data Source PubMed

Genomics

S. cerevisiae Genome annotation for Saccharomyces cerevisiae. Data loaded includes:
  • PrimaryIdentifier
  • SecondaryIdentifier
  • Symbol
  • Name
  • Length
  • Description
  • Feature type
  • Locations
  • Sequences
SGD Saccharomyces Genome Database - PubMed: 9169866  

Proteins

S. cerevisiae Protein annotation SGD SGD - PubMed: 17142230  

Gene Ontology

S. cerevisiae GO annotations GO at SGD Gene Ontology Consortium - PubMed:10802651  

Comparative Genomics

S. cerevisiae

D. melanogaster

D. rerio

C. elegans

M. musculus

R. norvegicus

H. sapiens

A. gambiae

 Orthologue and paralogue relationships between these 8 organisms Treefam - release 7.0 Ruan et al - PubMed: 18056084  

Phenotypes

 S. cerevisiae Phenotypes SGD Saccharomyces Genome Database - PubMed: 9169866  

Interactions

 S. cerevisiae Interactions from the BioGRID BioGRID at SGD - Version 2.0.xx Stark et al - PubMed:16381927  

Literature

 S. cerevisiae Gene versus publications SGD - 02 Sep, 2009 Saccharomyces Genome Database - PubMed: 9169866  

Pathways

 S. cerevisiae Curated pathway information and the genes involved in them Pathways at SGD - Release 57, 25 January 2011 Kanehisa et al - PubMed: 16381885  

Gene Expression

 S. cerevisiae Microarray-based gene expression data of S. cerevisiae SPELL SPELL Data Sets AHibbs MA, et al. - PubMed: 1234567  


YeastMine is a collaboration between SGD and the Intermine project at the Cambridge Systems Biology Centre. YeastMine is funded by NHGRI grant 2R01HG004834.
Copyright © 1997-2013 The Board of Trustees of Leland Stanford Junior University. Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied. The SGD project at Stanford University is supported by a Genome Research Resource Grant from the US National Human Genome Research Institute, part of the US National Institutes of Health.